PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537508.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 385aa    MW: 42149.1 Da    PI: 8.4709
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.4e-135091147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++avk++G g W+ I    g ++t+ q++s+ qk+
   XP_010537508.1 50 REKWTEEEHQKFLEAVKLYGRG-WRQIE---G-TKTAVQIRSHAQKF 91
                     789*******************.***76...6.899*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-144496IPR009057Homeodomain-like
PROSITE profilePS5129417.1594596IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-74793IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-144894IPR006447Myb domain, plants
SMARTSM007172.5E-74994IPR001005SANT/Myb domain
PfamPF002492.5E-105090IPR001005SANT/Myb domain
CDDcd001677.07E-95292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAAPDHSEGF SNVESTNGGV HGGVNTEMGS QSGENILPKV RKPYTITKQR EKWTEEEHQK  60
FLEAVKLYGR GWRQIEGTKT AVQIRSHAQK FFSKVARETD NVNDSPVKAI VIPPPRPKRK  120
PTHPYPRKMP VANQPDKTPS PTLSVTEKGN KSPTSVLSAF PSDNLEDQLN GCSSPNSCTT  180
DTHNSSEKGN EYATSKSPLE DGKPPLLMKS DSSNHWSVSP QEDAATVVVP VASITLFGKI  240
VLVVDPNKPS SPRQETGLKN PCPNIKKHTL SIDSVDVATD LSIGVSSYCQ ISTVNLYTEE  300
RPRVKAGVPE TSCTSSSAPG SVTEEAGNWG KRAEPCRWVS SSEKSTCYHT TRGFRPYKRC  360
LSEREVTSPV VTSEEEESRR ARVCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537508.10.0PREDICTED: protein REVEILLE 7 isoform X2
SwissprotB3H5A87e-95RVE7_ARATH; Protein REVEILLE 7
TrEMBLD7KGC92e-98D7KGC9_ARALL; Early-phytochrome-responsive1
STRINGfgenesh2_kg.1__2004__AT1G18330.27e-98(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.16e-79MYB_related family protein